# Authors: Manoj Kumar mks542@nyu.edu # License: BSD 3 clause import numpy as np from scipy import optimize, sparse from ..base import BaseEstimator, RegressorMixin from .base import LinearModel from ..utils import check_X_y from ..utils import check_consistent_length from ..utils import axis0_safe_slice from ..utils.extmath import safe_sparse_dot def _huber_loss_and_gradient(w, X, y, epsilon, alpha, sample_weight=None): """Returns the Huber loss and the gradient. Parameters ---------- w : ndarray, shape (n_features + 1,) or (n_features + 2,) Feature vector. w[:n_features] gives the coefficients w[-1] gives the scale factor and if the intercept is fit w[-2] gives the intercept factor. X : ndarray, shape (n_samples, n_features) Input data. y : ndarray, shape (n_samples,) Target vector. epsilon : float Robustness of the Huber estimator. alpha : float Regularization parameter. sample_weight : ndarray, shape (n_samples,), optional Weight assigned to each sample. Returns ------- loss : float Huber loss. gradient : ndarray, shape (len(w)) Returns the derivative of the Huber loss with respect to each coefficient, intercept and the scale as a vector. """ X_is_sparse = sparse.issparse(X) _, n_features = X.shape fit_intercept = (n_features + 2 == w.shape[0]) if fit_intercept: intercept = w[-2] sigma = w[-1] w = w[:n_features] n_samples = np.sum(sample_weight) # Calculate the values where |y - X'w -c / sigma| > epsilon # The values above this threshold are outliers. linear_loss = y - safe_sparse_dot(X, w) if fit_intercept: linear_loss -= intercept abs_linear_loss = np.abs(linear_loss) outliers_mask = abs_linear_loss > epsilon * sigma # Calculate the linear loss due to the outliers. # This is equal to (2 * M * |y - X'w -c / sigma| - M**2) * sigma outliers = abs_linear_loss[outliers_mask] num_outliers = np.count_nonzero(outliers_mask) n_non_outliers = X.shape[0] - num_outliers # n_sq_outliers includes the weight give to the outliers while # num_outliers is just the number of outliers. outliers_sw = sample_weight[outliers_mask] n_sw_outliers = np.sum(outliers_sw) outlier_loss = (2. * epsilon * np.sum(outliers_sw * outliers) - sigma * n_sw_outliers * epsilon ** 2) # Calculate the quadratic loss due to the non-outliers.- # This is equal to |(y - X'w - c)**2 / sigma**2| * sigma non_outliers = linear_loss[~outliers_mask] weighted_non_outliers = sample_weight[~outliers_mask] * non_outliers weighted_loss = np.dot(weighted_non_outliers.T, non_outliers) squared_loss = weighted_loss / sigma if fit_intercept: grad = np.zeros(n_features + 2) else: grad = np.zeros(n_features + 1) # Gradient due to the squared loss. X_non_outliers = -axis0_safe_slice(X, ~outliers_mask, n_non_outliers) grad[:n_features] = ( 2. / sigma * safe_sparse_dot(weighted_non_outliers, X_non_outliers)) # Gradient due to the linear loss. signed_outliers = np.ones_like(outliers) signed_outliers_mask = linear_loss[outliers_mask] < 0 signed_outliers[signed_outliers_mask] = -1.0 X_outliers = axis0_safe_slice(X, outliers_mask, num_outliers) sw_outliers = sample_weight[outliers_mask] * signed_outliers grad[:n_features] -= 2. * epsilon * ( safe_sparse_dot(sw_outliers, X_outliers)) # Gradient due to the penalty. grad[:n_features] += alpha * 2. * w # Gradient due to sigma. grad[-1] = n_samples grad[-1] -= n_sw_outliers * epsilon ** 2 grad[-1] -= squared_loss / sigma # Gradient due to the intercept. if fit_intercept: grad[-2] = -2. * np.sum(weighted_non_outliers) / sigma grad[-2] -= 2. * epsilon * np.sum(sw_outliers) loss = n_samples * sigma + squared_loss + outlier_loss loss += alpha * np.dot(w, w) return loss, grad class HuberRegressor(LinearModel, RegressorMixin, BaseEstimator): """Linear regression model that is robust to outliers. The Huber Regressor optimizes the squared loss for the samples where ``|(y - X'w) / sigma| < epsilon`` and the absolute loss for the samples where ``|(y - X'w) / sigma| > epsilon``, where w and sigma are parameters to be optimized. The parameter sigma makes sure that if y is scaled up or down by a certain factor, one does not need to rescale epsilon to achieve the same robustness. Note that this does not take into account the fact that the different features of X may be of different scales. This makes sure that the loss function is not heavily influenced by the outliers while not completely ignoring their effect. Read more in the :ref:`User Guide ` .. versionadded:: 0.18 Parameters ---------- epsilon : float, greater than 1.0, default 1.35 The parameter epsilon controls the number of samples that should be classified as outliers. The smaller the epsilon, the more robust it is to outliers. max_iter : int, default 100 Maximum number of iterations that scipy.optimize.fmin_l_bfgs_b should run for. alpha : float, default 0.0001 Regularization parameter. warm_start : bool, default False This is useful if the stored attributes of a previously used model has to be reused. If set to False, then the coefficients will be rewritten for every call to fit. fit_intercept : bool, default True Whether or not to fit the intercept. This can be set to False if the data is already centered around the origin. tol : float, default 1e-5 The iteration will stop when ``max{|proj g_i | i = 1, ..., n}`` <= ``tol`` where pg_i is the i-th component of the projected gradient. Attributes ---------- coef_ : array, shape (n_features,) Features got by optimizing the Huber loss. intercept_ : float Bias. scale_ : float The value by which ``|y - X'w - c|`` is scaled down. n_iter_ : int Number of iterations that fmin_l_bfgs_b has run for. .. versionchanged:: 0.20 In SciPy <= 1.0.0 the number of lbfgs iterations may exceed ``max_iter``. ``n_iter_`` will now report at most ``max_iter``. outliers_ : array, shape (n_samples,) A boolean mask which is set to True where the samples are identified as outliers. References ---------- .. [1] Peter J. Huber, Elvezio M. Ronchetti, Robust Statistics Concomitant scale estimates, pg 172 .. [2] Art B. Owen (2006), A robust hybrid of lasso and ridge regression. http://statweb.stanford.edu/~owen/reports/hhu.pdf """ def __init__(self, epsilon=1.35, max_iter=100, alpha=0.0001, warm_start=False, fit_intercept=True, tol=1e-05): self.epsilon = epsilon self.max_iter = max_iter self.alpha = alpha self.warm_start = warm_start self.fit_intercept = fit_intercept self.tol = tol def fit(self, X, y, sample_weight=None): """Fit the model according to the given training data. Parameters ---------- X : array-like, shape (n_samples, n_features) Training vector, where n_samples in the number of samples and n_features is the number of features. y : array-like, shape (n_samples,) Target vector relative to X. sample_weight : array-like, shape (n_samples,) Weight given to each sample. Returns ------- self : object Returns self. """ X, y = check_X_y( X, y, copy=False, accept_sparse=['csr'], y_numeric=True) if sample_weight is not None: sample_weight = np.array(sample_weight) check_consistent_length(y, sample_weight) else: sample_weight = np.ones_like(y) if self.epsilon < 1.0: raise ValueError( "epsilon should be greater than or equal to 1.0, got %f" % self.epsilon) if self.warm_start and hasattr(self, 'coef_'): parameters = np.concatenate( (self.coef_, [self.intercept_, self.scale_])) else: if self.fit_intercept: parameters = np.zeros(X.shape[1] + 2) else: parameters = np.zeros(X.shape[1] + 1) # Make sure to initialize the scale parameter to a strictly # positive value: parameters[-1] = 1 # Sigma or the scale factor should be non-negative. # Setting it to be zero might cause undefined bounds hence we set it # to a value close to zero. bounds = np.tile([-np.inf, np.inf], (parameters.shape[0], 1)) bounds[-1][0] = np.finfo(np.float64).eps * 10 # Type Error caused in old versions of SciPy because of no # maxiter argument ( <= 0.9). try: parameters, f, dict_ = optimize.fmin_l_bfgs_b( _huber_loss_and_gradient, parameters, args=(X, y, self.epsilon, self.alpha, sample_weight), maxiter=self.max_iter, pgtol=self.tol, bounds=bounds, iprint=0) except TypeError: parameters, f, dict_ = optimize.fmin_l_bfgs_b( _huber_loss_and_gradient, parameters, args=(X, y, self.epsilon, self.alpha, sample_weight), bounds=bounds) if dict_['warnflag'] == 2: raise ValueError("HuberRegressor convergence failed:" " l-BFGS-b solver terminated with %s" % dict_['task'].decode('ascii')) # In scipy <= 1.0.0, nit may exceed maxiter. # See https://github.com/scipy/scipy/issues/7854. self.n_iter_ = min(dict_['nit'], self.max_iter) self.scale_ = parameters[-1] if self.fit_intercept: self.intercept_ = parameters[-2] else: self.intercept_ = 0.0 self.coef_ = parameters[:X.shape[1]] residual = np.abs( y - safe_sparse_dot(X, self.coef_) - self.intercept_) self.outliers_ = residual > self.scale_ * self.epsilon return self