1461 lines
54 KiB
Python
1461 lines
54 KiB
Python
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# pylint: disable-msg=E1101,W0612
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import operator
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from datetime import datetime
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import pytest
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from numpy import nan
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import numpy as np
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import pandas as pd
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from pandas import (Series, DataFrame, bdate_range,
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isna, compat, _np_version_under1p12)
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from pandas.tseries.offsets import BDay
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import pandas.util.testing as tm
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import pandas.util._test_decorators as td
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from pandas.compat import range, PY36
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from pandas.core.reshape.util import cartesian_product
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import pandas.core.sparse.frame as spf
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from pandas._libs.sparse import BlockIndex, IntIndex
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from pandas.core.sparse.api import SparseSeries
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from pandas.tests.series.test_api import SharedWithSparse
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from itertools import product
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def _test_data1():
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# nan-based
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arr = np.arange(20, dtype=float)
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index = np.arange(20)
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arr[:2] = nan
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arr[5:10] = nan
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arr[-3:] = nan
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return arr, index
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def _test_data2():
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# nan-based
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arr = np.arange(15, dtype=float)
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index = np.arange(15)
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arr[7:12] = nan
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arr[-1:] = nan
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return arr, index
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def _test_data1_zero():
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# zero-based
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arr, index = _test_data1()
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arr[np.isnan(arr)] = 0
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return arr, index
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def _test_data2_zero():
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# zero-based
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arr, index = _test_data2()
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arr[np.isnan(arr)] = 0
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return arr, index
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class TestSparseSeries(SharedWithSparse):
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series_klass = SparseSeries
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# SharedWithSparse tests use generic, series_klass-agnostic assertion
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_assert_series_equal = staticmethod(tm.assert_sp_series_equal)
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def setup_method(self, method):
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arr, index = _test_data1()
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date_index = bdate_range('1/1/2011', periods=len(index))
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self.bseries = SparseSeries(arr, index=index, kind='block',
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name='bseries')
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self.ts = self.bseries
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self.btseries = SparseSeries(arr, index=date_index, kind='block')
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self.iseries = SparseSeries(arr, index=index, kind='integer',
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name='iseries')
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arr, index = _test_data2()
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self.bseries2 = SparseSeries(arr, index=index, kind='block')
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self.iseries2 = SparseSeries(arr, index=index, kind='integer')
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arr, index = _test_data1_zero()
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self.zbseries = SparseSeries(arr, index=index, kind='block',
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fill_value=0, name='zbseries')
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self.ziseries = SparseSeries(arr, index=index, kind='integer',
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fill_value=0)
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arr, index = _test_data2_zero()
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self.zbseries2 = SparseSeries(arr, index=index, kind='block',
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fill_value=0)
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self.ziseries2 = SparseSeries(arr, index=index, kind='integer',
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fill_value=0)
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def test_constructor_dict_input(self):
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# gh-16905
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constructor_dict = {1: 1.}
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index = [0, 1, 2]
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# Series with index passed in
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series = pd.Series(constructor_dict)
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expected = SparseSeries(series, index=index)
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result = SparseSeries(constructor_dict, index=index)
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tm.assert_sp_series_equal(result, expected)
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# Series with index and dictionary with no index
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expected = SparseSeries(series)
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result = SparseSeries(constructor_dict)
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tm.assert_sp_series_equal(result, expected)
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def test_constructor_dict_order(self):
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# GH19018
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# initialization ordering: by insertion order if python>= 3.6, else
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# order by value
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d = {'b': 1, 'a': 0, 'c': 2}
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result = SparseSeries(d)
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if PY36:
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expected = SparseSeries([1, 0, 2], index=list('bac'))
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else:
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expected = SparseSeries([0, 1, 2], index=list('abc'))
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tm.assert_sp_series_equal(result, expected)
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def test_constructor_dtype(self):
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arr = SparseSeries([np.nan, 1, 2, np.nan])
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assert arr.dtype == np.float64
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assert np.isnan(arr.fill_value)
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arr = SparseSeries([np.nan, 1, 2, np.nan], fill_value=0)
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assert arr.dtype == np.float64
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assert arr.fill_value == 0
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arr = SparseSeries([0, 1, 2, 4], dtype=np.int64, fill_value=np.nan)
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assert arr.dtype == np.int64
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assert np.isnan(arr.fill_value)
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arr = SparseSeries([0, 1, 2, 4], dtype=np.int64)
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assert arr.dtype == np.int64
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assert arr.fill_value == 0
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arr = SparseSeries([0, 1, 2, 4], fill_value=0, dtype=np.int64)
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assert arr.dtype == np.int64
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assert arr.fill_value == 0
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def test_iteration_and_str(self):
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[x for x in self.bseries]
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str(self.bseries)
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def test_construct_DataFrame_with_sp_series(self):
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# it works!
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df = DataFrame({'col': self.bseries})
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# printing & access
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df.iloc[:1]
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df['col']
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df.dtypes
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str(df)
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tm.assert_sp_series_equal(df['col'], self.bseries, check_names=False)
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result = df.iloc[:, 0]
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tm.assert_sp_series_equal(result, self.bseries, check_names=False)
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# blocking
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expected = Series({'col': 'float64:sparse'})
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result = df.ftypes
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tm.assert_series_equal(expected, result)
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def test_constructor_preserve_attr(self):
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arr = pd.SparseArray([1, 0, 3, 0], dtype=np.int64, fill_value=0)
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assert arr.dtype == np.int64
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assert arr.fill_value == 0
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s = pd.SparseSeries(arr, name='x')
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assert s.dtype == np.int64
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assert s.fill_value == 0
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def test_series_density(self):
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# GH2803
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ts = Series(np.random.randn(10))
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ts[2:-2] = nan
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sts = ts.to_sparse()
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density = sts.density # don't die
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assert density == 4 / 10.0
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def test_sparse_to_dense(self):
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arr, index = _test_data1()
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series = self.bseries.to_dense()
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tm.assert_series_equal(series, Series(arr, name='bseries'))
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# see gh-14647
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with tm.assert_produces_warning(FutureWarning,
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check_stacklevel=False):
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series = self.bseries.to_dense(sparse_only=True)
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indexer = np.isfinite(arr)
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exp = Series(arr[indexer], index=index[indexer], name='bseries')
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tm.assert_series_equal(series, exp)
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series = self.iseries.to_dense()
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tm.assert_series_equal(series, Series(arr, name='iseries'))
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arr, index = _test_data1_zero()
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series = self.zbseries.to_dense()
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tm.assert_series_equal(series, Series(arr, name='zbseries'))
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series = self.ziseries.to_dense()
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tm.assert_series_equal(series, Series(arr))
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def test_to_dense_fill_value(self):
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s = pd.Series([1, np.nan, np.nan, 3, np.nan])
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res = SparseSeries(s).to_dense()
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tm.assert_series_equal(res, s)
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res = SparseSeries(s, fill_value=0).to_dense()
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tm.assert_series_equal(res, s)
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s = pd.Series([1, np.nan, 0, 3, 0])
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res = SparseSeries(s, fill_value=0).to_dense()
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tm.assert_series_equal(res, s)
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res = SparseSeries(s, fill_value=0).to_dense()
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tm.assert_series_equal(res, s)
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s = pd.Series([np.nan, np.nan, np.nan, np.nan, np.nan])
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res = SparseSeries(s).to_dense()
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tm.assert_series_equal(res, s)
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s = pd.Series([np.nan, np.nan, np.nan, np.nan, np.nan])
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res = SparseSeries(s, fill_value=0).to_dense()
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tm.assert_series_equal(res, s)
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def test_dense_to_sparse(self):
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series = self.bseries.to_dense()
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bseries = series.to_sparse(kind='block')
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iseries = series.to_sparse(kind='integer')
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tm.assert_sp_series_equal(bseries, self.bseries)
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tm.assert_sp_series_equal(iseries, self.iseries, check_names=False)
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assert iseries.name == self.bseries.name
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assert len(series) == len(bseries)
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assert len(series) == len(iseries)
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assert series.shape == bseries.shape
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assert series.shape == iseries.shape
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# non-NaN fill value
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series = self.zbseries.to_dense()
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zbseries = series.to_sparse(kind='block', fill_value=0)
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ziseries = series.to_sparse(kind='integer', fill_value=0)
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tm.assert_sp_series_equal(zbseries, self.zbseries)
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tm.assert_sp_series_equal(ziseries, self.ziseries, check_names=False)
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assert ziseries.name == self.zbseries.name
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assert len(series) == len(zbseries)
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assert len(series) == len(ziseries)
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assert series.shape == zbseries.shape
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assert series.shape == ziseries.shape
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def test_to_dense_preserve_name(self):
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assert (self.bseries.name is not None)
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result = self.bseries.to_dense()
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assert result.name == self.bseries.name
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def test_constructor(self):
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# test setup guys
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assert np.isnan(self.bseries.fill_value)
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assert isinstance(self.bseries.sp_index, BlockIndex)
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assert np.isnan(self.iseries.fill_value)
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assert isinstance(self.iseries.sp_index, IntIndex)
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assert self.zbseries.fill_value == 0
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tm.assert_numpy_array_equal(self.zbseries.values.values,
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self.bseries.to_dense().fillna(0).values)
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# pass SparseSeries
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def _check_const(sparse, name):
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# use passed series name
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result = SparseSeries(sparse)
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tm.assert_sp_series_equal(result, sparse)
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assert sparse.name == name
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assert result.name == name
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# use passed name
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result = SparseSeries(sparse, name='x')
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tm.assert_sp_series_equal(result, sparse, check_names=False)
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assert result.name == 'x'
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_check_const(self.bseries, 'bseries')
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_check_const(self.iseries, 'iseries')
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_check_const(self.zbseries, 'zbseries')
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# Sparse time series works
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date_index = bdate_range('1/1/2000', periods=len(self.bseries))
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s5 = SparseSeries(self.bseries, index=date_index)
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assert isinstance(s5, SparseSeries)
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# pass Series
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bseries2 = SparseSeries(self.bseries.to_dense())
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tm.assert_numpy_array_equal(self.bseries.sp_values, bseries2.sp_values)
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# pass dict?
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# don't copy the data by default
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values = np.ones(self.bseries.npoints)
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sp = SparseSeries(values, sparse_index=self.bseries.sp_index)
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sp.sp_values[:5] = 97
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assert values[0] == 97
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assert len(sp) == 20
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assert sp.shape == (20, )
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# but can make it copy!
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sp = SparseSeries(values, sparse_index=self.bseries.sp_index,
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copy=True)
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sp.sp_values[:5] = 100
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assert values[0] == 97
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assert len(sp) == 20
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assert sp.shape == (20, )
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def test_constructor_scalar(self):
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data = 5
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sp = SparseSeries(data, np.arange(100))
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sp = sp.reindex(np.arange(200))
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assert (sp.loc[:99] == data).all()
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assert isna(sp.loc[100:]).all()
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data = np.nan
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sp = SparseSeries(data, np.arange(100))
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assert len(sp) == 100
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assert sp.shape == (100, )
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def test_constructor_ndarray(self):
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pass
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def test_constructor_nonnan(self):
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arr = [0, 0, 0, nan, nan]
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sp_series = SparseSeries(arr, fill_value=0)
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tm.assert_numpy_array_equal(sp_series.values.values, np.array(arr))
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assert len(sp_series) == 5
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assert sp_series.shape == (5, )
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def test_constructor_empty(self):
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# see gh-9272
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sp = SparseSeries()
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assert len(sp.index) == 0
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assert sp.shape == (0, )
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def test_copy_astype(self):
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cop = self.bseries.astype(np.float64)
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assert cop is not self.bseries
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assert cop.sp_index is self.bseries.sp_index
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assert cop.dtype == np.float64
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cop2 = self.iseries.copy()
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tm.assert_sp_series_equal(cop, self.bseries)
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tm.assert_sp_series_equal(cop2, self.iseries)
|
||
|
|
|
||
|
|
# test that data is copied
|
||
|
|
cop[:5] = 97
|
||
|
|
assert cop.sp_values[0] == 97
|
||
|
|
assert self.bseries.sp_values[0] != 97
|
||
|
|
|
||
|
|
# correct fill value
|
||
|
|
zbcop = self.zbseries.copy()
|
||
|
|
zicop = self.ziseries.copy()
|
||
|
|
|
||
|
|
tm.assert_sp_series_equal(zbcop, self.zbseries)
|
||
|
|
tm.assert_sp_series_equal(zicop, self.ziseries)
|
||
|
|
|
||
|
|
# no deep copy
|
||
|
|
view = self.bseries.copy(deep=False)
|
||
|
|
view.sp_values[:5] = 5
|
||
|
|
assert (self.bseries.sp_values[:5] == 5).all()
|
||
|
|
|
||
|
|
def test_shape(self):
|
||
|
|
# see gh-10452
|
||
|
|
assert self.bseries.shape == (20, )
|
||
|
|
assert self.btseries.shape == (20, )
|
||
|
|
assert self.iseries.shape == (20, )
|
||
|
|
|
||
|
|
assert self.bseries2.shape == (15, )
|
||
|
|
assert self.iseries2.shape == (15, )
|
||
|
|
|
||
|
|
assert self.zbseries2.shape == (15, )
|
||
|
|
assert self.ziseries2.shape == (15, )
|
||
|
|
|
||
|
|
def test_astype(self):
|
||
|
|
with pytest.raises(ValueError):
|
||
|
|
self.bseries.astype(np.int64)
|
||
|
|
|
||
|
|
def test_astype_all(self):
|
||
|
|
orig = pd.Series(np.array([1, 2, 3]))
|
||
|
|
s = SparseSeries(orig)
|
||
|
|
|
||
|
|
types = [np.float64, np.float32, np.int64,
|
||
|
|
np.int32, np.int16, np.int8]
|
||
|
|
for typ in types:
|
||
|
|
res = s.astype(typ)
|
||
|
|
assert res.dtype == typ
|
||
|
|
tm.assert_series_equal(res.to_dense(), orig.astype(typ))
|
||
|
|
|
||
|
|
def test_kind(self):
|
||
|
|
assert self.bseries.kind == 'block'
|
||
|
|
assert self.iseries.kind == 'integer'
|
||
|
|
|
||
|
|
def test_to_frame(self):
|
||
|
|
# GH 9850
|
||
|
|
s = pd.SparseSeries([1, 2, 0, nan, 4, nan, 0], name='x')
|
||
|
|
exp = pd.SparseDataFrame({'x': [1, 2, 0, nan, 4, nan, 0]})
|
||
|
|
tm.assert_sp_frame_equal(s.to_frame(), exp)
|
||
|
|
|
||
|
|
exp = pd.SparseDataFrame({'y': [1, 2, 0, nan, 4, nan, 0]})
|
||
|
|
tm.assert_sp_frame_equal(s.to_frame(name='y'), exp)
|
||
|
|
|
||
|
|
s = pd.SparseSeries([1, 2, 0, nan, 4, nan, 0], name='x', fill_value=0)
|
||
|
|
exp = pd.SparseDataFrame({'x': [1, 2, 0, nan, 4, nan, 0]},
|
||
|
|
default_fill_value=0)
|
||
|
|
|
||
|
|
tm.assert_sp_frame_equal(s.to_frame(), exp)
|
||
|
|
exp = pd.DataFrame({'y': [1, 2, 0, nan, 4, nan, 0]})
|
||
|
|
tm.assert_frame_equal(s.to_frame(name='y').to_dense(), exp)
|
||
|
|
|
||
|
|
def test_pickle(self):
|
||
|
|
def _test_roundtrip(series):
|
||
|
|
unpickled = tm.round_trip_pickle(series)
|
||
|
|
tm.assert_sp_series_equal(series, unpickled)
|
||
|
|
tm.assert_series_equal(series.to_dense(), unpickled.to_dense())
|
||
|
|
|
||
|
|
self._check_all(_test_roundtrip)
|
||
|
|
|
||
|
|
def _check_all(self, check_func):
|
||
|
|
check_func(self.bseries)
|
||
|
|
check_func(self.iseries)
|
||
|
|
check_func(self.zbseries)
|
||
|
|
check_func(self.ziseries)
|
||
|
|
|
||
|
|
def test_getitem(self):
|
||
|
|
def _check_getitem(sp, dense):
|
||
|
|
for idx, val in compat.iteritems(dense):
|
||
|
|
tm.assert_almost_equal(val, sp[idx])
|
||
|
|
|
||
|
|
for i in range(len(dense)):
|
||
|
|
tm.assert_almost_equal(sp[i], dense[i])
|
||
|
|
# j = np.float64(i)
|
||
|
|
# assert_almost_equal(sp[j], dense[j])
|
||
|
|
|
||
|
|
# API change 1/6/2012
|
||
|
|
# negative getitem works
|
||
|
|
# for i in xrange(len(dense)):
|
||
|
|
# assert_almost_equal(sp[-i], dense[-i])
|
||
|
|
|
||
|
|
_check_getitem(self.bseries, self.bseries.to_dense())
|
||
|
|
_check_getitem(self.btseries, self.btseries.to_dense())
|
||
|
|
|
||
|
|
_check_getitem(self.zbseries, self.zbseries.to_dense())
|
||
|
|
_check_getitem(self.iseries, self.iseries.to_dense())
|
||
|
|
_check_getitem(self.ziseries, self.ziseries.to_dense())
|
||
|
|
|
||
|
|
# exception handling
|
||
|
|
pytest.raises(Exception, self.bseries.__getitem__,
|
||
|
|
len(self.bseries) + 1)
|
||
|
|
|
||
|
|
# index not contained
|
||
|
|
pytest.raises(Exception, self.btseries.__getitem__,
|
||
|
|
self.btseries.index[-1] + BDay())
|
||
|
|
|
||
|
|
def test_get_get_value(self):
|
||
|
|
tm.assert_almost_equal(self.bseries.get(10), self.bseries[10])
|
||
|
|
assert self.bseries.get(len(self.bseries) + 1) is None
|
||
|
|
|
||
|
|
dt = self.btseries.index[10]
|
||
|
|
result = self.btseries.get(dt)
|
||
|
|
expected = self.btseries.to_dense()[dt]
|
||
|
|
tm.assert_almost_equal(result, expected)
|
||
|
|
|
||
|
|
with tm.assert_produces_warning(FutureWarning,
|
||
|
|
check_stacklevel=False):
|
||
|
|
tm.assert_almost_equal(
|
||
|
|
self.bseries.get_value(10), self.bseries[10])
|
||
|
|
|
||
|
|
def test_set_value(self):
|
||
|
|
|
||
|
|
idx = self.btseries.index[7]
|
||
|
|
with tm.assert_produces_warning(FutureWarning,
|
||
|
|
check_stacklevel=False):
|
||
|
|
self.btseries.set_value(idx, 0)
|
||
|
|
assert self.btseries[idx] == 0
|
||
|
|
|
||
|
|
with tm.assert_produces_warning(FutureWarning,
|
||
|
|
check_stacklevel=False):
|
||
|
|
self.iseries.set_value('foobar', 0)
|
||
|
|
assert self.iseries.index[-1] == 'foobar'
|
||
|
|
assert self.iseries['foobar'] == 0
|
||
|
|
|
||
|
|
def test_getitem_slice(self):
|
||
|
|
idx = self.bseries.index
|
||
|
|
res = self.bseries[::2]
|
||
|
|
assert isinstance(res, SparseSeries)
|
||
|
|
|
||
|
|
expected = self.bseries.reindex(idx[::2])
|
||
|
|
tm.assert_sp_series_equal(res, expected)
|
||
|
|
|
||
|
|
res = self.bseries[:5]
|
||
|
|
assert isinstance(res, SparseSeries)
|
||
|
|
tm.assert_sp_series_equal(res, self.bseries.reindex(idx[:5]))
|
||
|
|
|
||
|
|
res = self.bseries[5:]
|
||
|
|
tm.assert_sp_series_equal(res, self.bseries.reindex(idx[5:]))
|
||
|
|
|
||
|
|
# negative indices
|
||
|
|
res = self.bseries[:-3]
|
||
|
|
tm.assert_sp_series_equal(res, self.bseries.reindex(idx[:-3]))
|
||
|
|
|
||
|
|
def test_take(self):
|
||
|
|
def _compare_with_dense(sp):
|
||
|
|
dense = sp.to_dense()
|
||
|
|
|
||
|
|
def _compare(idx):
|
||
|
|
dense_result = dense.take(idx).values
|
||
|
|
sparse_result = sp.take(idx)
|
||
|
|
assert isinstance(sparse_result, SparseSeries)
|
||
|
|
tm.assert_almost_equal(dense_result,
|
||
|
|
sparse_result.values.values)
|
||
|
|
|
||
|
|
_compare([1., 2., 3., 4., 5., 0.])
|
||
|
|
_compare([7, 2, 9, 0, 4])
|
||
|
|
_compare([3, 6, 3, 4, 7])
|
||
|
|
|
||
|
|
self._check_all(_compare_with_dense)
|
||
|
|
|
||
|
|
pytest.raises(Exception, self.bseries.take,
|
||
|
|
[0, len(self.bseries) + 1])
|
||
|
|
|
||
|
|
# Corner case
|
||
|
|
sp = SparseSeries(np.ones(10) * nan)
|
||
|
|
exp = pd.Series(np.repeat(nan, 5))
|
||
|
|
tm.assert_series_equal(sp.take([0, 1, 2, 3, 4]), exp)
|
||
|
|
|
||
|
|
with tm.assert_produces_warning(FutureWarning):
|
||
|
|
sp.take([1, 5], convert=True)
|
||
|
|
|
||
|
|
with tm.assert_produces_warning(FutureWarning):
|
||
|
|
sp.take([1, 5], convert=False)
|
||
|
|
|
||
|
|
def test_numpy_take(self):
|
||
|
|
sp = SparseSeries([1.0, 2.0, 3.0])
|
||
|
|
indices = [1, 2]
|
||
|
|
|
||
|
|
if not _np_version_under1p12:
|
||
|
|
tm.assert_series_equal(np.take(sp, indices, axis=0).to_dense(),
|
||
|
|
np.take(sp.to_dense(), indices, axis=0))
|
||
|
|
|
||
|
|
msg = "the 'out' parameter is not supported"
|
||
|
|
tm.assert_raises_regex(ValueError, msg, np.take,
|
||
|
|
sp, indices, out=np.empty(sp.shape))
|
||
|
|
|
||
|
|
msg = "the 'mode' parameter is not supported"
|
||
|
|
tm.assert_raises_regex(ValueError, msg, np.take,
|
||
|
|
sp, indices, out=None, mode='clip')
|
||
|
|
|
||
|
|
def test_setitem(self):
|
||
|
|
self.bseries[5] = 7.
|
||
|
|
assert self.bseries[5] == 7.
|
||
|
|
|
||
|
|
def test_setslice(self):
|
||
|
|
self.bseries[5:10] = 7.
|
||
|
|
tm.assert_series_equal(self.bseries[5:10].to_dense(),
|
||
|
|
Series(7., index=range(5, 10),
|
||
|
|
name=self.bseries.name))
|
||
|
|
|
||
|
|
def test_operators(self):
|
||
|
|
|
||
|
|
def _check_op(a, b, op):
|
||
|
|
sp_result = op(a, b)
|
||
|
|
adense = a.to_dense() if isinstance(a, SparseSeries) else a
|
||
|
|
bdense = b.to_dense() if isinstance(b, SparseSeries) else b
|
||
|
|
dense_result = op(adense, bdense)
|
||
|
|
tm.assert_almost_equal(sp_result.to_dense(), dense_result)
|
||
|
|
|
||
|
|
def check(a, b):
|
||
|
|
_check_op(a, b, operator.add)
|
||
|
|
_check_op(a, b, operator.sub)
|
||
|
|
_check_op(a, b, operator.truediv)
|
||
|
|
_check_op(a, b, operator.floordiv)
|
||
|
|
_check_op(a, b, operator.mul)
|
||
|
|
|
||
|
|
_check_op(a, b, lambda x, y: operator.add(y, x))
|
||
|
|
_check_op(a, b, lambda x, y: operator.sub(y, x))
|
||
|
|
_check_op(a, b, lambda x, y: operator.truediv(y, x))
|
||
|
|
_check_op(a, b, lambda x, y: operator.floordiv(y, x))
|
||
|
|
_check_op(a, b, lambda x, y: operator.mul(y, x))
|
||
|
|
|
||
|
|
# NaN ** 0 = 1 in C?
|
||
|
|
# _check_op(a, b, operator.pow)
|
||
|
|
# _check_op(a, b, lambda x, y: operator.pow(y, x))
|
||
|
|
|
||
|
|
check(self.bseries, self.bseries)
|
||
|
|
check(self.iseries, self.iseries)
|
||
|
|
check(self.bseries, self.iseries)
|
||
|
|
|
||
|
|
check(self.bseries, self.bseries2)
|
||
|
|
check(self.bseries, self.iseries2)
|
||
|
|
check(self.iseries, self.iseries2)
|
||
|
|
|
||
|
|
# scalar value
|
||
|
|
check(self.bseries, 5)
|
||
|
|
|
||
|
|
# zero-based
|
||
|
|
check(self.zbseries, self.zbseries * 2)
|
||
|
|
check(self.zbseries, self.zbseries2)
|
||
|
|
check(self.ziseries, self.ziseries2)
|
||
|
|
|
||
|
|
# with dense
|
||
|
|
result = self.bseries + self.bseries.to_dense()
|
||
|
|
tm.assert_sp_series_equal(result, self.bseries + self.bseries)
|
||
|
|
|
||
|
|
def test_binary_operators(self):
|
||
|
|
|
||
|
|
# skipping for now #####
|
||
|
|
import pytest
|
||
|
|
pytest.skip("skipping sparse binary operators test")
|
||
|
|
|
||
|
|
def _check_inplace_op(iop, op):
|
||
|
|
tmp = self.bseries.copy()
|
||
|
|
|
||
|
|
expected = op(tmp, self.bseries)
|
||
|
|
iop(tmp, self.bseries)
|
||
|
|
tm.assert_sp_series_equal(tmp, expected)
|
||
|
|
|
||
|
|
inplace_ops = ['add', 'sub', 'mul', 'truediv', 'floordiv', 'pow']
|
||
|
|
for op in inplace_ops:
|
||
|
|
_check_inplace_op(getattr(operator, "i%s" % op),
|
||
|
|
getattr(operator, op))
|
||
|
|
|
||
|
|
def test_abs(self):
|
||
|
|
s = SparseSeries([1, 2, -3], name='x')
|
||
|
|
expected = SparseSeries([1, 2, 3], name='x')
|
||
|
|
result = s.abs()
|
||
|
|
tm.assert_sp_series_equal(result, expected)
|
||
|
|
assert result.name == 'x'
|
||
|
|
|
||
|
|
result = abs(s)
|
||
|
|
tm.assert_sp_series_equal(result, expected)
|
||
|
|
assert result.name == 'x'
|
||
|
|
|
||
|
|
result = np.abs(s)
|
||
|
|
tm.assert_sp_series_equal(result, expected)
|
||
|
|
assert result.name == 'x'
|
||
|
|
|
||
|
|
s = SparseSeries([1, -2, 2, -3], fill_value=-2, name='x')
|
||
|
|
expected = SparseSeries([1, 2, 3], sparse_index=s.sp_index,
|
||
|
|
fill_value=2, name='x')
|
||
|
|
result = s.abs()
|
||
|
|
tm.assert_sp_series_equal(result, expected)
|
||
|
|
assert result.name == 'x'
|
||
|
|
|
||
|
|
result = abs(s)
|
||
|
|
tm.assert_sp_series_equal(result, expected)
|
||
|
|
assert result.name == 'x'
|
||
|
|
|
||
|
|
result = np.abs(s)
|
||
|
|
tm.assert_sp_series_equal(result, expected)
|
||
|
|
assert result.name == 'x'
|
||
|
|
|
||
|
|
def test_reindex(self):
|
||
|
|
def _compare_with_series(sps, new_index):
|
||
|
|
spsre = sps.reindex(new_index)
|
||
|
|
|
||
|
|
series = sps.to_dense()
|
||
|
|
seriesre = series.reindex(new_index)
|
||
|
|
seriesre = seriesre.to_sparse(fill_value=sps.fill_value)
|
||
|
|
|
||
|
|
tm.assert_sp_series_equal(spsre, seriesre)
|
||
|
|
tm.assert_series_equal(spsre.to_dense(), seriesre.to_dense())
|
||
|
|
|
||
|
|
_compare_with_series(self.bseries, self.bseries.index[::2])
|
||
|
|
_compare_with_series(self.bseries, list(self.bseries.index[::2]))
|
||
|
|
_compare_with_series(self.bseries, self.bseries.index[:10])
|
||
|
|
_compare_with_series(self.bseries, self.bseries.index[5:])
|
||
|
|
|
||
|
|
_compare_with_series(self.zbseries, self.zbseries.index[::2])
|
||
|
|
_compare_with_series(self.zbseries, self.zbseries.index[:10])
|
||
|
|
_compare_with_series(self.zbseries, self.zbseries.index[5:])
|
||
|
|
|
||
|
|
# special cases
|
||
|
|
same_index = self.bseries.reindex(self.bseries.index)
|
||
|
|
tm.assert_sp_series_equal(self.bseries, same_index)
|
||
|
|
assert same_index is not self.bseries
|
||
|
|
|
||
|
|
# corner cases
|
||
|
|
sp = SparseSeries([], index=[])
|
||
|
|
# TODO: sp_zero is not used anywhere...remove?
|
||
|
|
sp_zero = SparseSeries([], index=[], fill_value=0) # noqa
|
||
|
|
_compare_with_series(sp, np.arange(10))
|
||
|
|
|
||
|
|
# with copy=False
|
||
|
|
reindexed = self.bseries.reindex(self.bseries.index, copy=True)
|
||
|
|
reindexed.sp_values[:] = 1.
|
||
|
|
assert (self.bseries.sp_values != 1.).all()
|
||
|
|
|
||
|
|
reindexed = self.bseries.reindex(self.bseries.index, copy=False)
|
||
|
|
reindexed.sp_values[:] = 1.
|
||
|
|
tm.assert_numpy_array_equal(self.bseries.sp_values, np.repeat(1., 10))
|
||
|
|
|
||
|
|
def test_sparse_reindex(self):
|
||
|
|
length = 10
|
||
|
|
|
||
|
|
def _check(values, index1, index2, fill_value):
|
||
|
|
first_series = SparseSeries(values, sparse_index=index1,
|
||
|
|
fill_value=fill_value)
|
||
|
|
reindexed = first_series.sparse_reindex(index2)
|
||
|
|
assert reindexed.sp_index is index2
|
||
|
|
|
||
|
|
int_indices1 = index1.to_int_index().indices
|
||
|
|
int_indices2 = index2.to_int_index().indices
|
||
|
|
|
||
|
|
expected = Series(values, index=int_indices1)
|
||
|
|
expected = expected.reindex(int_indices2).fillna(fill_value)
|
||
|
|
tm.assert_almost_equal(expected.values, reindexed.sp_values)
|
||
|
|
|
||
|
|
# make sure level argument asserts
|
||
|
|
# TODO: expected is not used anywhere...remove?
|
||
|
|
expected = expected.reindex(int_indices2).fillna(fill_value) # noqa
|
||
|
|
|
||
|
|
def _check_with_fill_value(values, first, second, fill_value=nan):
|
||
|
|
i_index1 = IntIndex(length, first)
|
||
|
|
i_index2 = IntIndex(length, second)
|
||
|
|
|
||
|
|
b_index1 = i_index1.to_block_index()
|
||
|
|
b_index2 = i_index2.to_block_index()
|
||
|
|
|
||
|
|
_check(values, i_index1, i_index2, fill_value)
|
||
|
|
_check(values, b_index1, b_index2, fill_value)
|
||
|
|
|
||
|
|
def _check_all(values, first, second):
|
||
|
|
_check_with_fill_value(values, first, second, fill_value=nan)
|
||
|
|
_check_with_fill_value(values, first, second, fill_value=0)
|
||
|
|
|
||
|
|
index1 = [2, 4, 5, 6, 8, 9]
|
||
|
|
values1 = np.arange(6.)
|
||
|
|
|
||
|
|
_check_all(values1, index1, [2, 4, 5])
|
||
|
|
_check_all(values1, index1, [2, 3, 4, 5, 6, 7, 8, 9])
|
||
|
|
_check_all(values1, index1, [0, 1])
|
||
|
|
_check_all(values1, index1, [0, 1, 7, 8, 9])
|
||
|
|
_check_all(values1, index1, [])
|
||
|
|
|
||
|
|
first_series = SparseSeries(values1,
|
||
|
|
sparse_index=IntIndex(length, index1),
|
||
|
|
fill_value=nan)
|
||
|
|
with tm.assert_raises_regex(TypeError,
|
||
|
|
'new index must be a SparseIndex'):
|
||
|
|
reindexed = first_series.sparse_reindex(0) # noqa
|
||
|
|
|
||
|
|
def test_repr(self):
|
||
|
|
# TODO: These aren't used
|
||
|
|
bsrepr = repr(self.bseries) # noqa
|
||
|
|
isrepr = repr(self.iseries) # noqa
|
||
|
|
|
||
|
|
def test_iter(self):
|
||
|
|
pass
|
||
|
|
|
||
|
|
def test_truncate(self):
|
||
|
|
pass
|
||
|
|
|
||
|
|
def test_fillna(self):
|
||
|
|
pass
|
||
|
|
|
||
|
|
def test_groupby(self):
|
||
|
|
pass
|
||
|
|
|
||
|
|
def test_reductions(self):
|
||
|
|
def _compare_with_dense(obj, op):
|
||
|
|
sparse_result = getattr(obj, op)()
|
||
|
|
series = obj.to_dense()
|
||
|
|
dense_result = getattr(series, op)()
|
||
|
|
assert sparse_result == dense_result
|
||
|
|
|
||
|
|
to_compare = ['count', 'sum', 'mean', 'std', 'var', 'skew']
|
||
|
|
|
||
|
|
def _compare_all(obj):
|
||
|
|
for op in to_compare:
|
||
|
|
_compare_with_dense(obj, op)
|
||
|
|
|
||
|
|
_compare_all(self.bseries)
|
||
|
|
|
||
|
|
self.bseries.sp_values[5:10] = np.NaN
|
||
|
|
_compare_all(self.bseries)
|
||
|
|
|
||
|
|
_compare_all(self.zbseries)
|
||
|
|
self.zbseries.sp_values[5:10] = np.NaN
|
||
|
|
_compare_all(self.zbseries)
|
||
|
|
|
||
|
|
series = self.zbseries.copy()
|
||
|
|
series.fill_value = 2
|
||
|
|
_compare_all(series)
|
||
|
|
|
||
|
|
nonna = Series(np.random.randn(20)).to_sparse()
|
||
|
|
_compare_all(nonna)
|
||
|
|
|
||
|
|
nonna2 = Series(np.random.randn(20)).to_sparse(fill_value=0)
|
||
|
|
_compare_all(nonna2)
|
||
|
|
|
||
|
|
def test_dropna(self):
|
||
|
|
sp = SparseSeries([0, 0, 0, nan, nan, 5, 6], fill_value=0)
|
||
|
|
|
||
|
|
sp_valid = sp.dropna()
|
||
|
|
|
||
|
|
expected = sp.to_dense().dropna()
|
||
|
|
expected = expected[expected != 0]
|
||
|
|
exp_arr = pd.SparseArray(expected.values, fill_value=0, kind='block')
|
||
|
|
tm.assert_sp_array_equal(sp_valid.values, exp_arr)
|
||
|
|
tm.assert_index_equal(sp_valid.index, expected.index)
|
||
|
|
assert len(sp_valid.sp_values) == 2
|
||
|
|
|
||
|
|
result = self.bseries.dropna()
|
||
|
|
expected = self.bseries.to_dense().dropna()
|
||
|
|
assert not isinstance(result, SparseSeries)
|
||
|
|
tm.assert_series_equal(result, expected)
|
||
|
|
|
||
|
|
def test_homogenize(self):
|
||
|
|
def _check_matches(indices, expected):
|
||
|
|
data = {}
|
||
|
|
for i, idx in enumerate(indices):
|
||
|
|
data[i] = SparseSeries(idx.to_int_index().indices,
|
||
|
|
sparse_index=idx, fill_value=np.nan)
|
||
|
|
# homogenized is only valid with NaN fill values
|
||
|
|
homogenized = spf.homogenize(data)
|
||
|
|
|
||
|
|
for k, v in compat.iteritems(homogenized):
|
||
|
|
assert (v.sp_index.equals(expected))
|
||
|
|
|
||
|
|
indices1 = [BlockIndex(10, [2], [7]), BlockIndex(10, [1, 6], [3, 4]),
|
||
|
|
BlockIndex(10, [0], [10])]
|
||
|
|
expected1 = BlockIndex(10, [2, 6], [2, 3])
|
||
|
|
_check_matches(indices1, expected1)
|
||
|
|
|
||
|
|
indices2 = [BlockIndex(10, [2], [7]), BlockIndex(10, [2], [7])]
|
||
|
|
expected2 = indices2[0]
|
||
|
|
_check_matches(indices2, expected2)
|
||
|
|
|
||
|
|
# must have NaN fill value
|
||
|
|
data = {'a': SparseSeries(np.arange(7), sparse_index=expected2,
|
||
|
|
fill_value=0)}
|
||
|
|
with tm.assert_raises_regex(TypeError, "NaN fill value"):
|
||
|
|
spf.homogenize(data)
|
||
|
|
|
||
|
|
def test_fill_value_corner(self):
|
||
|
|
cop = self.zbseries.copy()
|
||
|
|
cop.fill_value = 0
|
||
|
|
result = self.bseries / cop
|
||
|
|
|
||
|
|
assert np.isnan(result.fill_value)
|
||
|
|
|
||
|
|
cop2 = self.zbseries.copy()
|
||
|
|
cop2.fill_value = 1
|
||
|
|
result = cop2 / cop
|
||
|
|
# 1 / 0 is inf
|
||
|
|
assert np.isinf(result.fill_value)
|
||
|
|
|
||
|
|
def test_fill_value_when_combine_const(self):
|
||
|
|
# GH12723
|
||
|
|
s = SparseSeries([0, 1, np.nan, 3, 4, 5], index=np.arange(6))
|
||
|
|
|
||
|
|
exp = s.fillna(0).add(2)
|
||
|
|
res = s.add(2, fill_value=0)
|
||
|
|
tm.assert_series_equal(res, exp)
|
||
|
|
|
||
|
|
def test_shift(self):
|
||
|
|
series = SparseSeries([nan, 1., 2., 3., nan, nan], index=np.arange(6))
|
||
|
|
|
||
|
|
shifted = series.shift(0)
|
||
|
|
assert shifted is not series
|
||
|
|
tm.assert_sp_series_equal(shifted, series)
|
||
|
|
|
||
|
|
f = lambda s: s.shift(1)
|
||
|
|
_dense_series_compare(series, f)
|
||
|
|
|
||
|
|
f = lambda s: s.shift(-2)
|
||
|
|
_dense_series_compare(series, f)
|
||
|
|
|
||
|
|
series = SparseSeries([nan, 1., 2., 3., nan, nan],
|
||
|
|
index=bdate_range('1/1/2000', periods=6))
|
||
|
|
f = lambda s: s.shift(2, freq='B')
|
||
|
|
_dense_series_compare(series, f)
|
||
|
|
|
||
|
|
f = lambda s: s.shift(2, freq=BDay())
|
||
|
|
_dense_series_compare(series, f)
|
||
|
|
|
||
|
|
def test_shift_nan(self):
|
||
|
|
# GH 12908
|
||
|
|
orig = pd.Series([np.nan, 2, np.nan, 4, 0, np.nan, 0])
|
||
|
|
sparse = orig.to_sparse()
|
||
|
|
|
||
|
|
tm.assert_sp_series_equal(sparse.shift(0), orig.shift(0).to_sparse())
|
||
|
|
tm.assert_sp_series_equal(sparse.shift(1), orig.shift(1).to_sparse())
|
||
|
|
tm.assert_sp_series_equal(sparse.shift(2), orig.shift(2).to_sparse())
|
||
|
|
tm.assert_sp_series_equal(sparse.shift(3), orig.shift(3).to_sparse())
|
||
|
|
|
||
|
|
tm.assert_sp_series_equal(sparse.shift(-1), orig.shift(-1).to_sparse())
|
||
|
|
tm.assert_sp_series_equal(sparse.shift(-2), orig.shift(-2).to_sparse())
|
||
|
|
tm.assert_sp_series_equal(sparse.shift(-3), orig.shift(-3).to_sparse())
|
||
|
|
tm.assert_sp_series_equal(sparse.shift(-4), orig.shift(-4).to_sparse())
|
||
|
|
|
||
|
|
sparse = orig.to_sparse(fill_value=0)
|
||
|
|
tm.assert_sp_series_equal(sparse.shift(0),
|
||
|
|
orig.shift(0).to_sparse(fill_value=0))
|
||
|
|
tm.assert_sp_series_equal(sparse.shift(1),
|
||
|
|
orig.shift(1).to_sparse(fill_value=0))
|
||
|
|
tm.assert_sp_series_equal(sparse.shift(2),
|
||
|
|
orig.shift(2).to_sparse(fill_value=0))
|
||
|
|
tm.assert_sp_series_equal(sparse.shift(3),
|
||
|
|
orig.shift(3).to_sparse(fill_value=0))
|
||
|
|
|
||
|
|
tm.assert_sp_series_equal(sparse.shift(-1),
|
||
|
|
orig.shift(-1).to_sparse(fill_value=0))
|
||
|
|
tm.assert_sp_series_equal(sparse.shift(-2),
|
||
|
|
orig.shift(-2).to_sparse(fill_value=0))
|
||
|
|
tm.assert_sp_series_equal(sparse.shift(-3),
|
||
|
|
orig.shift(-3).to_sparse(fill_value=0))
|
||
|
|
tm.assert_sp_series_equal(sparse.shift(-4),
|
||
|
|
orig.shift(-4).to_sparse(fill_value=0))
|
||
|
|
|
||
|
|
def test_shift_dtype(self):
|
||
|
|
# GH 12908
|
||
|
|
orig = pd.Series([1, 2, 3, 4], dtype=np.int64)
|
||
|
|
|
||
|
|
sparse = orig.to_sparse()
|
||
|
|
tm.assert_sp_series_equal(sparse.shift(0), orig.shift(0).to_sparse())
|
||
|
|
|
||
|
|
sparse = orig.to_sparse(fill_value=np.nan)
|
||
|
|
tm.assert_sp_series_equal(sparse.shift(0),
|
||
|
|
orig.shift(0).to_sparse(fill_value=np.nan))
|
||
|
|
# shift(1) or more span changes dtype to float64
|
||
|
|
tm.assert_sp_series_equal(sparse.shift(1), orig.shift(1).to_sparse())
|
||
|
|
tm.assert_sp_series_equal(sparse.shift(2), orig.shift(2).to_sparse())
|
||
|
|
tm.assert_sp_series_equal(sparse.shift(3), orig.shift(3).to_sparse())
|
||
|
|
|
||
|
|
tm.assert_sp_series_equal(sparse.shift(-1), orig.shift(-1).to_sparse())
|
||
|
|
tm.assert_sp_series_equal(sparse.shift(-2), orig.shift(-2).to_sparse())
|
||
|
|
tm.assert_sp_series_equal(sparse.shift(-3), orig.shift(-3).to_sparse())
|
||
|
|
tm.assert_sp_series_equal(sparse.shift(-4), orig.shift(-4).to_sparse())
|
||
|
|
|
||
|
|
def test_shift_dtype_fill_value(self):
|
||
|
|
# GH 12908
|
||
|
|
orig = pd.Series([1, 0, 0, 4], dtype=np.int64)
|
||
|
|
|
||
|
|
for v in [0, 1, np.nan]:
|
||
|
|
sparse = orig.to_sparse(fill_value=v)
|
||
|
|
|
||
|
|
tm.assert_sp_series_equal(sparse.shift(0),
|
||
|
|
orig.shift(0).to_sparse(fill_value=v))
|
||
|
|
tm.assert_sp_series_equal(sparse.shift(1),
|
||
|
|
orig.shift(1).to_sparse(fill_value=v))
|
||
|
|
tm.assert_sp_series_equal(sparse.shift(2),
|
||
|
|
orig.shift(2).to_sparse(fill_value=v))
|
||
|
|
tm.assert_sp_series_equal(sparse.shift(3),
|
||
|
|
orig.shift(3).to_sparse(fill_value=v))
|
||
|
|
|
||
|
|
tm.assert_sp_series_equal(sparse.shift(-1),
|
||
|
|
orig.shift(-1).to_sparse(fill_value=v))
|
||
|
|
tm.assert_sp_series_equal(sparse.shift(-2),
|
||
|
|
orig.shift(-2).to_sparse(fill_value=v))
|
||
|
|
tm.assert_sp_series_equal(sparse.shift(-3),
|
||
|
|
orig.shift(-3).to_sparse(fill_value=v))
|
||
|
|
tm.assert_sp_series_equal(sparse.shift(-4),
|
||
|
|
orig.shift(-4).to_sparse(fill_value=v))
|
||
|
|
|
||
|
|
def test_combine_first(self):
|
||
|
|
s = self.bseries
|
||
|
|
|
||
|
|
result = s[::2].combine_first(s)
|
||
|
|
result2 = s[::2].combine_first(s.to_dense())
|
||
|
|
|
||
|
|
expected = s[::2].to_dense().combine_first(s.to_dense())
|
||
|
|
expected = expected.to_sparse(fill_value=s.fill_value)
|
||
|
|
|
||
|
|
tm.assert_sp_series_equal(result, result2)
|
||
|
|
tm.assert_sp_series_equal(result, expected)
|
||
|
|
|
||
|
|
@pytest.mark.parametrize('deep,fill_values', [([True, False],
|
||
|
|
[0, 1, np.nan, None])])
|
||
|
|
def test_memory_usage_deep(self, deep, fill_values):
|
||
|
|
for deep, fill_value in product(deep, fill_values):
|
||
|
|
sparse_series = SparseSeries(fill_values, fill_value=fill_value)
|
||
|
|
dense_series = Series(fill_values)
|
||
|
|
sparse_usage = sparse_series.memory_usage(deep=deep)
|
||
|
|
dense_usage = dense_series.memory_usage(deep=deep)
|
||
|
|
|
||
|
|
assert sparse_usage < dense_usage
|
||
|
|
|
||
|
|
|
||
|
|
class TestSparseHandlingMultiIndexes(object):
|
||
|
|
|
||
|
|
def setup_method(self, method):
|
||
|
|
miindex = pd.MultiIndex.from_product(
|
||
|
|
[["x", "y"], ["10", "20"]], names=['row-foo', 'row-bar'])
|
||
|
|
micol = pd.MultiIndex.from_product(
|
||
|
|
[['a', 'b', 'c'], ["1", "2"]], names=['col-foo', 'col-bar'])
|
||
|
|
dense_multiindex_frame = pd.DataFrame(
|
||
|
|
index=miindex, columns=micol).sort_index().sort_index(axis=1)
|
||
|
|
self.dense_multiindex_frame = dense_multiindex_frame.fillna(value=3.14)
|
||
|
|
|
||
|
|
def test_to_sparse_preserve_multiindex_names_columns(self):
|
||
|
|
sparse_multiindex_frame = self.dense_multiindex_frame.to_sparse()
|
||
|
|
sparse_multiindex_frame = sparse_multiindex_frame.copy()
|
||
|
|
tm.assert_index_equal(sparse_multiindex_frame.columns,
|
||
|
|
self.dense_multiindex_frame.columns)
|
||
|
|
|
||
|
|
def test_round_trip_preserve_multiindex_names(self):
|
||
|
|
sparse_multiindex_frame = self.dense_multiindex_frame.to_sparse()
|
||
|
|
round_trip_multiindex_frame = sparse_multiindex_frame.to_dense()
|
||
|
|
tm.assert_frame_equal(self.dense_multiindex_frame,
|
||
|
|
round_trip_multiindex_frame,
|
||
|
|
check_column_type=True,
|
||
|
|
check_names=True)
|
||
|
|
|
||
|
|
|
||
|
|
@td.skip_if_no_scipy
|
||
|
|
class TestSparseSeriesScipyInteraction(object):
|
||
|
|
# Issue 8048: add SparseSeries coo methods
|
||
|
|
|
||
|
|
def setup_method(self, method):
|
||
|
|
import scipy.sparse
|
||
|
|
# SparseSeries inputs used in tests, the tests rely on the order
|
||
|
|
self.sparse_series = []
|
||
|
|
s = pd.Series([3.0, nan, 1.0, 2.0, nan, nan])
|
||
|
|
s.index = pd.MultiIndex.from_tuples([(1, 2, 'a', 0),
|
||
|
|
(1, 2, 'a', 1),
|
||
|
|
(1, 1, 'b', 0),
|
||
|
|
(1, 1, 'b', 1),
|
||
|
|
(2, 1, 'b', 0),
|
||
|
|
(2, 1, 'b', 1)],
|
||
|
|
names=['A', 'B', 'C', 'D'])
|
||
|
|
self.sparse_series.append(s.to_sparse())
|
||
|
|
|
||
|
|
ss = self.sparse_series[0].copy()
|
||
|
|
ss.index.names = [3, 0, 1, 2]
|
||
|
|
self.sparse_series.append(ss)
|
||
|
|
|
||
|
|
ss = pd.Series([
|
||
|
|
nan
|
||
|
|
] * 12, index=cartesian_product((range(3), range(4)))).to_sparse()
|
||
|
|
for k, v in zip([(0, 0), (1, 2), (1, 3)], [3.0, 1.0, 2.0]):
|
||
|
|
ss[k] = v
|
||
|
|
self.sparse_series.append(ss)
|
||
|
|
|
||
|
|
# results used in tests
|
||
|
|
self.coo_matrices = []
|
||
|
|
self.coo_matrices.append(scipy.sparse.coo_matrix(
|
||
|
|
([3.0, 1.0, 2.0], ([0, 1, 1], [0, 2, 3])), shape=(3, 4)))
|
||
|
|
self.coo_matrices.append(scipy.sparse.coo_matrix(
|
||
|
|
([3.0, 1.0, 2.0], ([1, 0, 0], [0, 2, 3])), shape=(3, 4)))
|
||
|
|
self.coo_matrices.append(scipy.sparse.coo_matrix(
|
||
|
|
([3.0, 1.0, 2.0], ([0, 1, 1], [0, 0, 1])), shape=(3, 2)))
|
||
|
|
self.ils = [[(1, 2), (1, 1), (2, 1)], [(1, 1), (1, 2), (2, 1)],
|
||
|
|
[(1, 2, 'a'), (1, 1, 'b'), (2, 1, 'b')]]
|
||
|
|
self.jls = [[('a', 0), ('a', 1), ('b', 0), ('b', 1)], [0, 1]]
|
||
|
|
|
||
|
|
def test_to_coo_text_names_integer_row_levels_nosort(self):
|
||
|
|
ss = self.sparse_series[0]
|
||
|
|
kwargs = {'row_levels': [0, 1], 'column_levels': [2, 3]}
|
||
|
|
result = (self.coo_matrices[0], self.ils[0], self.jls[0])
|
||
|
|
self._run_test(ss, kwargs, result)
|
||
|
|
|
||
|
|
def test_to_coo_text_names_integer_row_levels_sort(self):
|
||
|
|
ss = self.sparse_series[0]
|
||
|
|
kwargs = {'row_levels': [0, 1],
|
||
|
|
'column_levels': [2, 3],
|
||
|
|
'sort_labels': True}
|
||
|
|
result = (self.coo_matrices[1], self.ils[1], self.jls[0])
|
||
|
|
self._run_test(ss, kwargs, result)
|
||
|
|
|
||
|
|
def test_to_coo_text_names_text_row_levels_nosort_col_level_single(self):
|
||
|
|
ss = self.sparse_series[0]
|
||
|
|
kwargs = {'row_levels': ['A', 'B', 'C'],
|
||
|
|
'column_levels': ['D'],
|
||
|
|
'sort_labels': False}
|
||
|
|
result = (self.coo_matrices[2], self.ils[2], self.jls[1])
|
||
|
|
self._run_test(ss, kwargs, result)
|
||
|
|
|
||
|
|
def test_to_coo_integer_names_integer_row_levels_nosort(self):
|
||
|
|
ss = self.sparse_series[1]
|
||
|
|
kwargs = {'row_levels': [3, 0], 'column_levels': [1, 2]}
|
||
|
|
result = (self.coo_matrices[0], self.ils[0], self.jls[0])
|
||
|
|
self._run_test(ss, kwargs, result)
|
||
|
|
|
||
|
|
def test_to_coo_text_names_text_row_levels_nosort(self):
|
||
|
|
ss = self.sparse_series[0]
|
||
|
|
kwargs = {'row_levels': ['A', 'B'], 'column_levels': ['C', 'D']}
|
||
|
|
result = (self.coo_matrices[0], self.ils[0], self.jls[0])
|
||
|
|
self._run_test(ss, kwargs, result)
|
||
|
|
|
||
|
|
def test_to_coo_bad_partition_nonnull_intersection(self):
|
||
|
|
ss = self.sparse_series[0]
|
||
|
|
pytest.raises(ValueError, ss.to_coo, ['A', 'B', 'C'], ['C', 'D'])
|
||
|
|
|
||
|
|
def test_to_coo_bad_partition_small_union(self):
|
||
|
|
ss = self.sparse_series[0]
|
||
|
|
pytest.raises(ValueError, ss.to_coo, ['A'], ['C', 'D'])
|
||
|
|
|
||
|
|
def test_to_coo_nlevels_less_than_two(self):
|
||
|
|
ss = self.sparse_series[0]
|
||
|
|
ss.index = np.arange(len(ss.index))
|
||
|
|
pytest.raises(ValueError, ss.to_coo)
|
||
|
|
|
||
|
|
def test_to_coo_bad_ilevel(self):
|
||
|
|
ss = self.sparse_series[0]
|
||
|
|
pytest.raises(KeyError, ss.to_coo, ['A', 'B'], ['C', 'D', 'E'])
|
||
|
|
|
||
|
|
def test_to_coo_duplicate_index_entries(self):
|
||
|
|
ss = pd.concat([self.sparse_series[0],
|
||
|
|
self.sparse_series[0]]).to_sparse()
|
||
|
|
pytest.raises(ValueError, ss.to_coo, ['A', 'B'], ['C', 'D'])
|
||
|
|
|
||
|
|
def test_from_coo_dense_index(self):
|
||
|
|
ss = SparseSeries.from_coo(self.coo_matrices[0], dense_index=True)
|
||
|
|
check = self.sparse_series[2]
|
||
|
|
tm.assert_sp_series_equal(ss, check)
|
||
|
|
|
||
|
|
def test_from_coo_nodense_index(self):
|
||
|
|
ss = SparseSeries.from_coo(self.coo_matrices[0], dense_index=False)
|
||
|
|
check = self.sparse_series[2]
|
||
|
|
check = check.dropna().to_sparse()
|
||
|
|
tm.assert_sp_series_equal(ss, check)
|
||
|
|
|
||
|
|
def test_from_coo_long_repr(self):
|
||
|
|
# GH 13114
|
||
|
|
# test it doesn't raise error. Formatting is tested in test_format
|
||
|
|
import scipy.sparse
|
||
|
|
|
||
|
|
sparse = SparseSeries.from_coo(scipy.sparse.rand(350, 18))
|
||
|
|
repr(sparse)
|
||
|
|
|
||
|
|
def _run_test(self, ss, kwargs, check):
|
||
|
|
results = ss.to_coo(**kwargs)
|
||
|
|
self._check_results_to_coo(results, check)
|
||
|
|
# for every test, also test symmetry property (transpose), switch
|
||
|
|
# row_levels and column_levels
|
||
|
|
d = kwargs.copy()
|
||
|
|
d['row_levels'] = kwargs['column_levels']
|
||
|
|
d['column_levels'] = kwargs['row_levels']
|
||
|
|
results = ss.to_coo(**d)
|
||
|
|
results = (results[0].T, results[2], results[1])
|
||
|
|
self._check_results_to_coo(results, check)
|
||
|
|
|
||
|
|
def _check_results_to_coo(self, results, check):
|
||
|
|
(A, il, jl) = results
|
||
|
|
(A_result, il_result, jl_result) = check
|
||
|
|
# convert to dense and compare
|
||
|
|
tm.assert_numpy_array_equal(A.todense(), A_result.todense())
|
||
|
|
# or compare directly as difference of sparse
|
||
|
|
# assert(abs(A - A_result).max() < 1e-12) # max is failing in python
|
||
|
|
# 2.6
|
||
|
|
assert il == il_result
|
||
|
|
assert jl == jl_result
|
||
|
|
|
||
|
|
def test_concat(self):
|
||
|
|
val1 = np.array([1, 2, np.nan, np.nan, 0, np.nan])
|
||
|
|
val2 = np.array([3, np.nan, 4, 0, 0])
|
||
|
|
|
||
|
|
for kind in ['integer', 'block']:
|
||
|
|
sparse1 = pd.SparseSeries(val1, name='x', kind=kind)
|
||
|
|
sparse2 = pd.SparseSeries(val2, name='y', kind=kind)
|
||
|
|
|
||
|
|
res = pd.concat([sparse1, sparse2])
|
||
|
|
exp = pd.concat([pd.Series(val1), pd.Series(val2)])
|
||
|
|
exp = pd.SparseSeries(exp, kind=kind)
|
||
|
|
tm.assert_sp_series_equal(res, exp)
|
||
|
|
|
||
|
|
sparse1 = pd.SparseSeries(val1, fill_value=0, name='x', kind=kind)
|
||
|
|
sparse2 = pd.SparseSeries(val2, fill_value=0, name='y', kind=kind)
|
||
|
|
|
||
|
|
res = pd.concat([sparse1, sparse2])
|
||
|
|
exp = pd.concat([pd.Series(val1), pd.Series(val2)])
|
||
|
|
exp = pd.SparseSeries(exp, fill_value=0, kind=kind)
|
||
|
|
tm.assert_sp_series_equal(res, exp)
|
||
|
|
|
||
|
|
def test_concat_axis1(self):
|
||
|
|
val1 = np.array([1, 2, np.nan, np.nan, 0, np.nan])
|
||
|
|
val2 = np.array([3, np.nan, 4, 0, 0])
|
||
|
|
|
||
|
|
sparse1 = pd.SparseSeries(val1, name='x')
|
||
|
|
sparse2 = pd.SparseSeries(val2, name='y')
|
||
|
|
|
||
|
|
res = pd.concat([sparse1, sparse2], axis=1)
|
||
|
|
exp = pd.concat([pd.Series(val1, name='x'),
|
||
|
|
pd.Series(val2, name='y')], axis=1)
|
||
|
|
exp = pd.SparseDataFrame(exp)
|
||
|
|
tm.assert_sp_frame_equal(res, exp)
|
||
|
|
|
||
|
|
def test_concat_different_fill(self):
|
||
|
|
val1 = np.array([1, 2, np.nan, np.nan, 0, np.nan])
|
||
|
|
val2 = np.array([3, np.nan, 4, 0, 0])
|
||
|
|
|
||
|
|
for kind in ['integer', 'block']:
|
||
|
|
sparse1 = pd.SparseSeries(val1, name='x', kind=kind)
|
||
|
|
sparse2 = pd.SparseSeries(val2, name='y', kind=kind, fill_value=0)
|
||
|
|
|
||
|
|
res = pd.concat([sparse1, sparse2])
|
||
|
|
exp = pd.concat([pd.Series(val1), pd.Series(val2)])
|
||
|
|
exp = pd.SparseSeries(exp, kind=kind)
|
||
|
|
tm.assert_sp_series_equal(res, exp)
|
||
|
|
|
||
|
|
res = pd.concat([sparse2, sparse1])
|
||
|
|
exp = pd.concat([pd.Series(val2), pd.Series(val1)])
|
||
|
|
exp = pd.SparseSeries(exp, kind=kind, fill_value=0)
|
||
|
|
tm.assert_sp_series_equal(res, exp)
|
||
|
|
|
||
|
|
def test_concat_axis1_different_fill(self):
|
||
|
|
val1 = np.array([1, 2, np.nan, np.nan, 0, np.nan])
|
||
|
|
val2 = np.array([3, np.nan, 4, 0, 0])
|
||
|
|
|
||
|
|
sparse1 = pd.SparseSeries(val1, name='x')
|
||
|
|
sparse2 = pd.SparseSeries(val2, name='y', fill_value=0)
|
||
|
|
|
||
|
|
res = pd.concat([sparse1, sparse2], axis=1)
|
||
|
|
exp = pd.concat([pd.Series(val1, name='x'),
|
||
|
|
pd.Series(val2, name='y')], axis=1)
|
||
|
|
assert isinstance(res, pd.SparseDataFrame)
|
||
|
|
tm.assert_frame_equal(res.to_dense(), exp)
|
||
|
|
|
||
|
|
def test_concat_different_kind(self):
|
||
|
|
val1 = np.array([1, 2, np.nan, np.nan, 0, np.nan])
|
||
|
|
val2 = np.array([3, np.nan, 4, 0, 0])
|
||
|
|
|
||
|
|
sparse1 = pd.SparseSeries(val1, name='x', kind='integer')
|
||
|
|
sparse2 = pd.SparseSeries(val2, name='y', kind='block', fill_value=0)
|
||
|
|
|
||
|
|
res = pd.concat([sparse1, sparse2])
|
||
|
|
exp = pd.concat([pd.Series(val1), pd.Series(val2)])
|
||
|
|
exp = pd.SparseSeries(exp, kind='integer')
|
||
|
|
tm.assert_sp_series_equal(res, exp)
|
||
|
|
|
||
|
|
res = pd.concat([sparse2, sparse1])
|
||
|
|
exp = pd.concat([pd.Series(val2), pd.Series(val1)])
|
||
|
|
exp = pd.SparseSeries(exp, kind='block', fill_value=0)
|
||
|
|
tm.assert_sp_series_equal(res, exp)
|
||
|
|
|
||
|
|
def test_concat_sparse_dense(self):
|
||
|
|
# use first input's fill_value
|
||
|
|
val1 = np.array([1, 2, np.nan, np.nan, 0, np.nan])
|
||
|
|
val2 = np.array([3, np.nan, 4, 0, 0])
|
||
|
|
|
||
|
|
for kind in ['integer', 'block']:
|
||
|
|
sparse = pd.SparseSeries(val1, name='x', kind=kind)
|
||
|
|
dense = pd.Series(val2, name='y')
|
||
|
|
|
||
|
|
res = pd.concat([sparse, dense])
|
||
|
|
exp = pd.concat([pd.Series(val1), dense])
|
||
|
|
exp = pd.SparseSeries(exp, kind=kind)
|
||
|
|
tm.assert_sp_series_equal(res, exp)
|
||
|
|
|
||
|
|
res = pd.concat([dense, sparse, dense])
|
||
|
|
exp = pd.concat([dense, pd.Series(val1), dense])
|
||
|
|
exp = pd.SparseSeries(exp, kind=kind)
|
||
|
|
tm.assert_sp_series_equal(res, exp)
|
||
|
|
|
||
|
|
sparse = pd.SparseSeries(val1, name='x', kind=kind, fill_value=0)
|
||
|
|
dense = pd.Series(val2, name='y')
|
||
|
|
|
||
|
|
res = pd.concat([sparse, dense])
|
||
|
|
exp = pd.concat([pd.Series(val1), dense])
|
||
|
|
exp = pd.SparseSeries(exp, kind=kind, fill_value=0)
|
||
|
|
tm.assert_sp_series_equal(res, exp)
|
||
|
|
|
||
|
|
res = pd.concat([dense, sparse, dense])
|
||
|
|
exp = pd.concat([dense, pd.Series(val1), dense])
|
||
|
|
exp = pd.SparseSeries(exp, kind=kind, fill_value=0)
|
||
|
|
tm.assert_sp_series_equal(res, exp)
|
||
|
|
|
||
|
|
def test_value_counts(self):
|
||
|
|
vals = [1, 2, nan, 0, nan, 1, 2, nan, nan, 1, 2, 0, 1, 1]
|
||
|
|
dense = pd.Series(vals, name='xx')
|
||
|
|
|
||
|
|
sparse = pd.SparseSeries(vals, name='xx')
|
||
|
|
tm.assert_series_equal(sparse.value_counts(),
|
||
|
|
dense.value_counts())
|
||
|
|
tm.assert_series_equal(sparse.value_counts(dropna=False),
|
||
|
|
dense.value_counts(dropna=False))
|
||
|
|
|
||
|
|
sparse = pd.SparseSeries(vals, name='xx', fill_value=0)
|
||
|
|
tm.assert_series_equal(sparse.value_counts(),
|
||
|
|
dense.value_counts())
|
||
|
|
tm.assert_series_equal(sparse.value_counts(dropna=False),
|
||
|
|
dense.value_counts(dropna=False))
|
||
|
|
|
||
|
|
def test_value_counts_dup(self):
|
||
|
|
vals = [1, 2, nan, 0, nan, 1, 2, nan, nan, 1, 2, 0, 1, 1]
|
||
|
|
|
||
|
|
# numeric op may cause sp_values to include the same value as
|
||
|
|
# fill_value
|
||
|
|
dense = pd.Series(vals, name='xx') / 0.
|
||
|
|
sparse = pd.SparseSeries(vals, name='xx') / 0.
|
||
|
|
tm.assert_series_equal(sparse.value_counts(),
|
||
|
|
dense.value_counts())
|
||
|
|
tm.assert_series_equal(sparse.value_counts(dropna=False),
|
||
|
|
dense.value_counts(dropna=False))
|
||
|
|
|
||
|
|
vals = [1, 2, 0, 0, 0, 1, 2, 0, 0, 1, 2, 0, 1, 1]
|
||
|
|
|
||
|
|
dense = pd.Series(vals, name='xx') * 0.
|
||
|
|
sparse = pd.SparseSeries(vals, name='xx') * 0.
|
||
|
|
tm.assert_series_equal(sparse.value_counts(),
|
||
|
|
dense.value_counts())
|
||
|
|
tm.assert_series_equal(sparse.value_counts(dropna=False),
|
||
|
|
dense.value_counts(dropna=False))
|
||
|
|
|
||
|
|
def test_value_counts_int(self):
|
||
|
|
vals = [1, 2, 0, 1, 2, 1, 2, 0, 1, 1]
|
||
|
|
dense = pd.Series(vals, name='xx')
|
||
|
|
|
||
|
|
# fill_value is np.nan, but should not be included in the result
|
||
|
|
sparse = pd.SparseSeries(vals, name='xx')
|
||
|
|
tm.assert_series_equal(sparse.value_counts(),
|
||
|
|
dense.value_counts())
|
||
|
|
tm.assert_series_equal(sparse.value_counts(dropna=False),
|
||
|
|
dense.value_counts(dropna=False))
|
||
|
|
|
||
|
|
sparse = pd.SparseSeries(vals, name='xx', fill_value=0)
|
||
|
|
tm.assert_series_equal(sparse.value_counts(),
|
||
|
|
dense.value_counts())
|
||
|
|
tm.assert_series_equal(sparse.value_counts(dropna=False),
|
||
|
|
dense.value_counts(dropna=False))
|
||
|
|
|
||
|
|
def test_isna(self):
|
||
|
|
# GH 8276
|
||
|
|
s = pd.SparseSeries([np.nan, np.nan, 1, 2, np.nan], name='xxx')
|
||
|
|
|
||
|
|
res = s.isna()
|
||
|
|
exp = pd.SparseSeries([True, True, False, False, True], name='xxx',
|
||
|
|
fill_value=True)
|
||
|
|
tm.assert_sp_series_equal(res, exp)
|
||
|
|
|
||
|
|
# if fill_value is not nan, True can be included in sp_values
|
||
|
|
s = pd.SparseSeries([np.nan, 0., 1., 2., 0.], name='xxx',
|
||
|
|
fill_value=0.)
|
||
|
|
res = s.isna()
|
||
|
|
assert isinstance(res, pd.SparseSeries)
|
||
|
|
exp = pd.Series([True, False, False, False, False], name='xxx')
|
||
|
|
tm.assert_series_equal(res.to_dense(), exp)
|
||
|
|
|
||
|
|
def test_notna(self):
|
||
|
|
# GH 8276
|
||
|
|
s = pd.SparseSeries([np.nan, np.nan, 1, 2, np.nan], name='xxx')
|
||
|
|
|
||
|
|
res = s.notna()
|
||
|
|
exp = pd.SparseSeries([False, False, True, True, False], name='xxx',
|
||
|
|
fill_value=False)
|
||
|
|
tm.assert_sp_series_equal(res, exp)
|
||
|
|
|
||
|
|
# if fill_value is not nan, True can be included in sp_values
|
||
|
|
s = pd.SparseSeries([np.nan, 0., 1., 2., 0.], name='xxx',
|
||
|
|
fill_value=0.)
|
||
|
|
res = s.notna()
|
||
|
|
assert isinstance(res, pd.SparseSeries)
|
||
|
|
exp = pd.Series([False, True, True, True, True], name='xxx')
|
||
|
|
tm.assert_series_equal(res.to_dense(), exp)
|
||
|
|
|
||
|
|
|
||
|
|
def _dense_series_compare(s, f):
|
||
|
|
result = f(s)
|
||
|
|
assert (isinstance(result, SparseSeries))
|
||
|
|
dense_result = f(s.to_dense())
|
||
|
|
tm.assert_series_equal(result.to_dense(), dense_result)
|
||
|
|
|
||
|
|
|
||
|
|
class TestSparseSeriesAnalytics(object):
|
||
|
|
|
||
|
|
def setup_method(self, method):
|
||
|
|
arr, index = _test_data1()
|
||
|
|
self.bseries = SparseSeries(arr, index=index, kind='block',
|
||
|
|
name='bseries')
|
||
|
|
|
||
|
|
arr, index = _test_data1_zero()
|
||
|
|
self.zbseries = SparseSeries(arr, index=index, kind='block',
|
||
|
|
fill_value=0, name='zbseries')
|
||
|
|
|
||
|
|
def test_cumsum(self):
|
||
|
|
result = self.bseries.cumsum()
|
||
|
|
expected = SparseSeries(self.bseries.to_dense().cumsum())
|
||
|
|
tm.assert_sp_series_equal(result, expected)
|
||
|
|
|
||
|
|
result = self.zbseries.cumsum()
|
||
|
|
expected = self.zbseries.to_dense().cumsum()
|
||
|
|
tm.assert_series_equal(result, expected)
|
||
|
|
|
||
|
|
axis = 1 # Series is 1-D, so only axis = 0 is valid.
|
||
|
|
msg = "No axis named {axis}".format(axis=axis)
|
||
|
|
with tm.assert_raises_regex(ValueError, msg):
|
||
|
|
self.bseries.cumsum(axis=axis)
|
||
|
|
|
||
|
|
def test_numpy_cumsum(self):
|
||
|
|
result = np.cumsum(self.bseries)
|
||
|
|
expected = SparseSeries(self.bseries.to_dense().cumsum())
|
||
|
|
tm.assert_sp_series_equal(result, expected)
|
||
|
|
|
||
|
|
result = np.cumsum(self.zbseries)
|
||
|
|
expected = self.zbseries.to_dense().cumsum()
|
||
|
|
tm.assert_series_equal(result, expected)
|
||
|
|
|
||
|
|
msg = "the 'dtype' parameter is not supported"
|
||
|
|
tm.assert_raises_regex(ValueError, msg, np.cumsum,
|
||
|
|
self.bseries, dtype=np.int64)
|
||
|
|
|
||
|
|
msg = "the 'out' parameter is not supported"
|
||
|
|
tm.assert_raises_regex(ValueError, msg, np.cumsum,
|
||
|
|
self.zbseries, out=result)
|
||
|
|
|
||
|
|
def test_numpy_func_call(self):
|
||
|
|
# no exception should be raised even though
|
||
|
|
# numpy passes in 'axis=None' or `axis=-1'
|
||
|
|
funcs = ['sum', 'cumsum', 'var', 'mean',
|
||
|
|
'prod', 'cumprod', 'std', 'argsort',
|
||
|
|
'min', 'max']
|
||
|
|
for func in funcs:
|
||
|
|
for series in ('bseries', 'zbseries'):
|
||
|
|
getattr(np, func)(getattr(self, series))
|
||
|
|
|
||
|
|
def test_deprecated_numpy_func_call(self):
|
||
|
|
# NOTE: These should be add to the 'test_numpy_func_call' test above
|
||
|
|
# once the behavior of argmin/argmax is corrected.
|
||
|
|
funcs = ['argmin', 'argmax']
|
||
|
|
for func in funcs:
|
||
|
|
for series in ('bseries', 'zbseries'):
|
||
|
|
with tm.assert_produces_warning(FutureWarning,
|
||
|
|
check_stacklevel=False):
|
||
|
|
getattr(np, func)(getattr(self, series))
|
||
|
|
|
||
|
|
with tm.assert_produces_warning(FutureWarning,
|
||
|
|
check_stacklevel=False):
|
||
|
|
getattr(getattr(self, series), func)()
|
||
|
|
|
||
|
|
def test_deprecated_reindex_axis(self):
|
||
|
|
# https://github.com/pandas-dev/pandas/issues/17833
|
||
|
|
with tm.assert_produces_warning(FutureWarning) as m:
|
||
|
|
self.bseries.reindex_axis([0, 1, 2])
|
||
|
|
assert 'reindex' in str(m[0].message)
|
||
|
|
|
||
|
|
|
||
|
|
@pytest.mark.parametrize(
|
||
|
|
'datetime_type', (np.datetime64,
|
||
|
|
pd.Timestamp,
|
||
|
|
lambda x: datetime.strptime(x, '%Y-%m-%d')))
|
||
|
|
def test_constructor_dict_datetime64_index(datetime_type):
|
||
|
|
# GH 9456
|
||
|
|
dates = ['1984-02-19', '1988-11-06', '1989-12-03', '1990-03-15']
|
||
|
|
values = [42544017.198965244, 1234565, 40512335.181958228, -1]
|
||
|
|
|
||
|
|
result = SparseSeries(dict(zip(map(datetime_type, dates), values)))
|
||
|
|
expected = SparseSeries(values, map(pd.Timestamp, dates))
|
||
|
|
|
||
|
|
tm.assert_sp_series_equal(result, expected)
|