500 lines
18 KiB
Python
500 lines
18 KiB
Python
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"""Module for reading and writing bzip2-compressed files.
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This module contains a backport of Python 3.4's bz2.open() function and
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BZ2File class, adapted to work with earlier versions of Python.
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"""
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__all__ = ["BZ2File", "open"]
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__author__ = "Nadeem Vawda <nadeem.vawda@gmail.com>"
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import io
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import sys
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import warnings
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try:
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from threading import RLock
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except ImportError:
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from dummy_threading import RLock
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from bz2 import BZ2Compressor, BZ2Decompressor
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_MODE_CLOSED = 0
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_MODE_READ = 1
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_MODE_READ_EOF = 2
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_MODE_WRITE = 3
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_BUFFER_SIZE = 8192
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_STR_TYPES = (str, unicode) if (str is bytes) else (str, bytes)
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# The 'x' mode for open() was introduced in Python 3.3.
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_HAS_OPEN_X_MODE = sys.version_info[:2] >= (3, 3)
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_builtin_open = open
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class BZ2File(io.BufferedIOBase):
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"""A file object providing transparent bzip2 (de)compression.
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A BZ2File can act as a wrapper for an existing file object, or refer
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directly to a named file on disk.
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Note that BZ2File provides a *binary* file interface - data read is
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returned as bytes, and data to be written should be given as bytes.
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"""
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def __init__(self, filename, mode="r", buffering=None, compresslevel=9):
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"""Open a bzip2-compressed file.
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If filename is a str, bytes or unicode object, it gives the name
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of the file to be opened. Otherwise, it should be a file object,
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which will be used to read or write the compressed data.
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mode can be 'r' for reading (default), 'w' for (over)writing,
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'x' for creating exclusively, or 'a' for appending. These can
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equivalently be given as 'rb', 'wb', 'xb', and 'ab'.
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buffering is ignored. Its use is deprecated.
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If mode is 'w', 'x' or 'a', compresslevel can be a number between 1
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and 9 specifying the level of compression: 1 produces the least
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compression, and 9 (default) produces the most compression.
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If mode is 'r', the input file may be the concatenation of
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multiple compressed streams.
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"""
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# This lock must be recursive, so that BufferedIOBase's
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# readline(), readlines() and writelines() don't deadlock.
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self._lock = RLock()
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self._fp = None
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self._closefp = False
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self._mode = _MODE_CLOSED
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self._pos = 0
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self._size = -1
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if buffering is not None:
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warnings.warn("Use of 'buffering' argument is deprecated",
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DeprecationWarning)
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if not (1 <= compresslevel <= 9):
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raise ValueError("compresslevel must be between 1 and 9")
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if mode in ("", "r", "rb"):
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mode = "rb"
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mode_code = _MODE_READ
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self._decompressor = BZ2Decompressor()
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self._buffer = b""
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self._buffer_offset = 0
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elif mode in ("w", "wb"):
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mode = "wb"
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mode_code = _MODE_WRITE
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self._compressor = BZ2Compressor(compresslevel)
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elif mode in ("x", "xb") and _HAS_OPEN_X_MODE:
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mode = "xb"
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mode_code = _MODE_WRITE
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self._compressor = BZ2Compressor(compresslevel)
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elif mode in ("a", "ab"):
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mode = "ab"
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mode_code = _MODE_WRITE
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self._compressor = BZ2Compressor(compresslevel)
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else:
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raise ValueError("Invalid mode: %r" % (mode,))
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if isinstance(filename, _STR_TYPES):
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self._fp = _builtin_open(filename, mode)
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self._closefp = True
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self._mode = mode_code
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elif hasattr(filename, "read") or hasattr(filename, "write"):
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self._fp = filename
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self._mode = mode_code
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else:
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raise TypeError("filename must be a %s or %s object, or a file" %
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(_STR_TYPES[0].__name__, _STR_TYPES[1].__name__))
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def close(self):
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"""Flush and close the file.
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May be called more than once without error. Once the file is
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closed, any other operation on it will raise a ValueError.
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"""
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with self._lock:
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if self._mode == _MODE_CLOSED:
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return
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try:
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if self._mode in (_MODE_READ, _MODE_READ_EOF):
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self._decompressor = None
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elif self._mode == _MODE_WRITE:
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self._fp.write(self._compressor.flush())
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self._compressor = None
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finally:
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try:
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if self._closefp:
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self._fp.close()
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finally:
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self._fp = None
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self._closefp = False
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self._mode = _MODE_CLOSED
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self._buffer = b""
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self._buffer_offset = 0
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@property
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def closed(self):
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"""True if this file is closed."""
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return self._mode == _MODE_CLOSED
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def fileno(self):
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"""Return the file descriptor for the underlying file."""
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self._check_not_closed()
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return self._fp.fileno()
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def seekable(self):
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"""Return whether the file supports seeking."""
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return self.readable() and (self._fp.seekable()
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if hasattr(self._fp, "seekable")
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else hasattr(self._fp, "seek"))
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def readable(self):
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"""Return whether the file was opened for reading."""
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self._check_not_closed()
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return self._mode in (_MODE_READ, _MODE_READ_EOF)
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def writable(self):
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"""Return whether the file was opened for writing."""
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self._check_not_closed()
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return self._mode == _MODE_WRITE
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# Mode-checking helper functions.
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def _check_not_closed(self):
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if self.closed:
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raise ValueError("I/O operation on closed file")
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def _check_can_read(self):
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if self._mode not in (_MODE_READ, _MODE_READ_EOF):
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self._check_not_closed()
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raise io.UnsupportedOperation("File not open for reading")
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def _check_can_write(self):
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if self._mode != _MODE_WRITE:
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self._check_not_closed()
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raise io.UnsupportedOperation("File not open for writing")
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def _check_can_seek(self):
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if self._mode not in (_MODE_READ, _MODE_READ_EOF):
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self._check_not_closed()
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raise io.UnsupportedOperation("Seeking is only supported "
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"on files open for reading")
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if hasattr(self._fp, "seekable") and not self._fp.seekable():
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raise io.UnsupportedOperation("The underlying file object "
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"does not support seeking")
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# Fill the readahead buffer if it is empty. Returns False on EOF.
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def _fill_buffer(self):
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if self._mode == _MODE_READ_EOF:
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return False
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# Depending on the input data, our call to the decompressor may not
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# return any data. In this case, try again after reading another block.
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while self._buffer_offset == len(self._buffer):
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rawblock = (self._decompressor.unused_data or
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self._fp.read(_BUFFER_SIZE))
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if not rawblock:
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try:
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self._decompressor.decompress(b"")
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except EOFError:
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# End-of-stream marker and end of file. We're good.
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self._mode = _MODE_READ_EOF
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self._size = self._pos
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return False
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else:
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# Problem - we were expecting more compressed data.
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raise EOFError("Compressed file ended before the "
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"end-of-stream marker was reached")
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try:
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self._buffer = self._decompressor.decompress(rawblock)
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except EOFError:
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# Continue to next stream.
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self._decompressor = BZ2Decompressor()
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try:
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self._buffer = self._decompressor.decompress(rawblock)
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except IOError:
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# Trailing data isn't a valid bzip2 stream. We're done here.
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self._mode = _MODE_READ_EOF
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self._size = self._pos
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return False
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self._buffer_offset = 0
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return True
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# Read data until EOF.
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# If return_data is false, consume the data without returning it.
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def _read_all(self, return_data=True):
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# The loop assumes that _buffer_offset is 0. Ensure that this is true.
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self._buffer = self._buffer[self._buffer_offset:]
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self._buffer_offset = 0
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blocks = []
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while self._fill_buffer():
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if return_data:
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blocks.append(self._buffer)
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self._pos += len(self._buffer)
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self._buffer = b""
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if return_data:
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return b"".join(blocks)
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# Read a block of up to n bytes.
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# If return_data is false, consume the data without returning it.
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def _read_block(self, n, return_data=True):
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# If we have enough data buffered, return immediately.
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end = self._buffer_offset + n
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if end <= len(self._buffer):
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data = self._buffer[self._buffer_offset : end]
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self._buffer_offset = end
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self._pos += len(data)
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return data if return_data else None
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# The loop assumes that _buffer_offset is 0. Ensure that this is true.
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self._buffer = self._buffer[self._buffer_offset:]
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self._buffer_offset = 0
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blocks = []
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while n > 0 and self._fill_buffer():
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if n < len(self._buffer):
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data = self._buffer[:n]
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self._buffer_offset = n
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else:
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data = self._buffer
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self._buffer = b""
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if return_data:
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blocks.append(data)
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self._pos += len(data)
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n -= len(data)
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if return_data:
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return b"".join(blocks)
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def peek(self, n=0):
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"""Return buffered data without advancing the file position.
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Always returns at least one byte of data, unless at EOF.
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The exact number of bytes returned is unspecified.
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"""
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with self._lock:
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self._check_can_read()
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if not self._fill_buffer():
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return b""
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return self._buffer[self._buffer_offset:]
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def read(self, size=-1):
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"""Read up to size uncompressed bytes from the file.
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If size is negative or omitted, read until EOF is reached.
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Returns b'' if the file is already at EOF.
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"""
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if size is None:
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raise TypeError()
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with self._lock:
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self._check_can_read()
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if size == 0:
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return b""
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elif size < 0:
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return self._read_all()
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else:
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return self._read_block(size)
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def read1(self, size=-1):
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"""Read up to size uncompressed bytes, while trying to avoid
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making multiple reads from the underlying stream.
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Returns b'' if the file is at EOF.
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"""
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# Usually, read1() calls _fp.read() at most once. However, sometimes
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# this does not give enough data for the decompressor to make progress.
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# In this case we make multiple reads, to avoid returning b"".
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with self._lock:
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self._check_can_read()
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if (size == 0 or
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# Only call _fill_buffer() if the buffer is actually empty.
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# This gives a significant speedup if *size* is small.
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(self._buffer_offset == len(self._buffer) and not self._fill_buffer())):
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return b""
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if size > 0:
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data = self._buffer[self._buffer_offset :
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self._buffer_offset + size]
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self._buffer_offset += len(data)
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else:
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data = self._buffer[self._buffer_offset:]
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self._buffer = b""
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self._buffer_offset = 0
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self._pos += len(data)
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return data
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def readinto(self, b):
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"""Read up to len(b) bytes into b.
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Returns the number of bytes read (0 for EOF).
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"""
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with self._lock:
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return io.BufferedIOBase.readinto(self, b)
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def readline(self, size=-1):
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"""Read a line of uncompressed bytes from the file.
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The terminating newline (if present) is retained. If size is
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non-negative, no more than size bytes will be read (in which
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case the line may be incomplete). Returns b'' if already at EOF.
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"""
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if not isinstance(size, int):
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if not hasattr(size, "__index__"):
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raise TypeError("Integer argument expected")
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size = size.__index__()
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with self._lock:
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self._check_can_read()
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# Shortcut for the common case - the whole line is in the buffer.
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if size < 0:
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end = self._buffer.find(b"\n", self._buffer_offset) + 1
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if end > 0:
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line = self._buffer[self._buffer_offset : end]
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self._buffer_offset = end
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self._pos += len(line)
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return line
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return io.BufferedIOBase.readline(self, size)
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def readlines(self, size=-1):
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"""Read a list of lines of uncompressed bytes from the file.
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size can be specified to control the number of lines read: no
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further lines will be read once the total size of the lines read
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so far equals or exceeds size.
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"""
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if not isinstance(size, int):
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if not hasattr(size, "__index__"):
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raise TypeError("Integer argument expected")
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size = size.__index__()
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with self._lock:
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return io.BufferedIOBase.readlines(self, size)
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|
|
def write(self, data):
|
||
|
|
"""Write a byte string to the file.
|
||
|
|
|
||
|
|
Returns the number of uncompressed bytes written, which is
|
||
|
|
always len(data). Note that due to buffering, the file on disk
|
||
|
|
may not reflect the data written until close() is called.
|
||
|
|
"""
|
||
|
|
with self._lock:
|
||
|
|
self._check_can_write()
|
||
|
|
compressed = self._compressor.compress(data)
|
||
|
|
self._fp.write(compressed)
|
||
|
|
self._pos += len(data)
|
||
|
|
return len(data)
|
||
|
|
|
||
|
|
def writelines(self, seq):
|
||
|
|
"""Write a sequence of byte strings to the file.
|
||
|
|
|
||
|
|
Returns the number of uncompressed bytes written.
|
||
|
|
seq can be any iterable yielding byte strings.
|
||
|
|
|
||
|
|
Line separators are not added between the written byte strings.
|
||
|
|
"""
|
||
|
|
with self._lock:
|
||
|
|
return io.BufferedIOBase.writelines(self, seq)
|
||
|
|
|
||
|
|
# Rewind the file to the beginning of the data stream.
|
||
|
|
def _rewind(self):
|
||
|
|
self._fp.seek(0, 0)
|
||
|
|
self._mode = _MODE_READ
|
||
|
|
self._pos = 0
|
||
|
|
self._decompressor = BZ2Decompressor()
|
||
|
|
self._buffer = b""
|
||
|
|
self._buffer_offset = 0
|
||
|
|
|
||
|
|
def seek(self, offset, whence=0):
|
||
|
|
"""Change the file position.
|
||
|
|
|
||
|
|
The new position is specified by offset, relative to the
|
||
|
|
position indicated by whence. Values for whence are:
|
||
|
|
|
||
|
|
0: start of stream (default); offset must not be negative
|
||
|
|
1: current stream position
|
||
|
|
2: end of stream; offset must not be positive
|
||
|
|
|
||
|
|
Returns the new file position.
|
||
|
|
|
||
|
|
Note that seeking is emulated, so depending on the parameters,
|
||
|
|
this operation may be extremely slow.
|
||
|
|
"""
|
||
|
|
with self._lock:
|
||
|
|
self._check_can_seek()
|
||
|
|
|
||
|
|
# Recalculate offset as an absolute file position.
|
||
|
|
if whence == 0:
|
||
|
|
pass
|
||
|
|
elif whence == 1:
|
||
|
|
offset = self._pos + offset
|
||
|
|
elif whence == 2:
|
||
|
|
# Seeking relative to EOF - we need to know the file's size.
|
||
|
|
if self._size < 0:
|
||
|
|
self._read_all(return_data=False)
|
||
|
|
offset = self._size + offset
|
||
|
|
else:
|
||
|
|
raise ValueError("Invalid value for whence: %s" % (whence,))
|
||
|
|
|
||
|
|
# Make it so that offset is the number of bytes to skip forward.
|
||
|
|
if offset < self._pos:
|
||
|
|
self._rewind()
|
||
|
|
else:
|
||
|
|
offset -= self._pos
|
||
|
|
|
||
|
|
# Read and discard data until we reach the desired position.
|
||
|
|
self._read_block(offset, return_data=False)
|
||
|
|
|
||
|
|
return self._pos
|
||
|
|
|
||
|
|
def tell(self):
|
||
|
|
"""Return the current file position."""
|
||
|
|
with self._lock:
|
||
|
|
self._check_not_closed()
|
||
|
|
return self._pos
|
||
|
|
|
||
|
|
|
||
|
|
def open(filename, mode="rb", compresslevel=9,
|
||
|
|
encoding=None, errors=None, newline=None):
|
||
|
|
"""Open a bzip2-compressed file in binary or text mode.
|
||
|
|
|
||
|
|
The filename argument can be an actual filename (a str, bytes or unicode
|
||
|
|
object), or an existing file object to read from or write to.
|
||
|
|
|
||
|
|
The mode argument can be "r", "rb", "w", "wb", "x", "xb", "a" or
|
||
|
|
"ab" for binary mode, or "rt", "wt", "xt" or "at" for text mode.
|
||
|
|
The default mode is "rb", and the default compresslevel is 9.
|
||
|
|
|
||
|
|
For binary mode, this function is equivalent to the BZ2File
|
||
|
|
constructor: BZ2File(filename, mode, compresslevel). In this case,
|
||
|
|
the encoding, errors and newline arguments must not be provided.
|
||
|
|
|
||
|
|
For text mode, a BZ2File object is created, and wrapped in an
|
||
|
|
io.TextIOWrapper instance with the specified encoding, error
|
||
|
|
handling behavior, and line ending(s).
|
||
|
|
|
||
|
|
"""
|
||
|
|
if "t" in mode:
|
||
|
|
if "b" in mode:
|
||
|
|
raise ValueError("Invalid mode: %r" % (mode,))
|
||
|
|
else:
|
||
|
|
if encoding is not None:
|
||
|
|
raise ValueError("Argument 'encoding' not supported in binary mode")
|
||
|
|
if errors is not None:
|
||
|
|
raise ValueError("Argument 'errors' not supported in binary mode")
|
||
|
|
if newline is not None:
|
||
|
|
raise ValueError("Argument 'newline' not supported in binary mode")
|
||
|
|
|
||
|
|
bz_mode = mode.replace("t", "")
|
||
|
|
binary_file = BZ2File(filename, bz_mode, compresslevel=compresslevel)
|
||
|
|
|
||
|
|
if "t" in mode:
|
||
|
|
return io.TextIOWrapper(binary_file, encoding, errors, newline)
|
||
|
|
else:
|
||
|
|
return binary_file
|